Something is (a little) off with Kdenlive AudioCorrelation
I did some test with synthetic WAV files (short burst of 5 cycles). Here's the alignement Kdenlive found for a 10 kHz bip (inside Kdenlive I mixed the Reference Sound and the aligned one into a stereo WAV file, here shown within Audacity)
They are off by almost 200 samples (@48ksps). Pourtant, with sci.py correlate the match is within an audio sample... hmm.
Note: the Kdenlive fitting is off by 3.45 ms, which is well within a video frame interval (33 ms for a 30 fps project).
Here's the jupyter notebook for those interested: link
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